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Lower Palaeolithic (Acheulean)
- Arkin 8 (Nubia)
- Nag Ahmend el-Khalifa
- Wadi Halfa
Middle Palaeolthic
- Arkin 5 (Nubia)
- Beit Allam (nr Abydos)
- Bir Tarfawi (BT-14)
- Bir Sahara
- Khor Musa
- Makhadma 6 (nr Qena)
- Nazlet Khater 1, 2, 3 (nr. Tahta)
- Nazlet Shahaba (nr. Denerah)
- Qena
- Taramsa (nr Denerah)
- Wadi Halfa
- Wadi Sodmein
Tarmasan
- Taramsa-1 (near Denderah)
- Boker Tachtit (Negev)
Upper Palaeolithic
- Shumikhat 1
- El Abadiya (Shumikhatian)
Late Palaeolithic
- Abka Site XXXII rock-art, Nubia - possibly
- Arab el Sahaba ?
- el-Hosh rock-art - possibly
- Jebel Sahaba site 117
- Kom Ombo GS-2B-1 (Afian)
- Shumikhat 2 (Silsillian)
- Makhadma 1
- Makhadma 2
- Makhadma 3
- Makhadma 4
- Makhadma 5
- El Qat’a
- Qena (Sebilian)
- Thomas Afia Village sites E71-K6B - K18A-E (Afian)
- Tushka site 8905, Aswan (Qadan)
- Wadi Halfa (Qadan)
- Wadi Halfa site 8899 and 8898 (Sebilian)
- Wadi Kubbaniya site E71K12 (Fakhurian)
- Wadi Kubbaniya E81-3, E81-4 (Kubbaniyan)
- Wadi Kubbbaniya E83-4 (Afian)
- Wadi Shait site GS-III, Kom Ombo Plain (Ballan-Silsilian)
Epipalaeolithic (Qarunian/Faiyum B)
- Arab el Sabaha
- Dibeira West 1, north Sudan (Arkinian)
- FS2 (Qarunian)
- Nazlet Khater-4
- Regenfeld
- Qasr el-Sagha plateau site E29-H1, Faiyum (Qarunian)
- Wadi Sodmein, Treee Shelter site, near Quseir (Elkabian)
- Helwan
Khartoum Mesolithic
- Abu Darbain
- Anebis
- Lower Khartoum
- Sorurab 1 and 2
- Shabana
- Shaqadud
- Siggai
Lower Egyptian Neolithic (Nile and Faiyum)
- Armant (Tarifian)
- E29-G3
- FS1
- FS3
- Kom K
- Kom W
- Merimda Beni Salama, Lower Egypt
- el-Tarif (Tarifian)
- Wadi Hof-Helwan area (El-Omari)
- Qasr el-Sagha area (Faiyum depression)
Delta Neolithic
- Merimde Beni Salama
- El Omari
- Maadi
Western Desert Neolithic
- Bir Kiseiba
- Djara
- Gilf Kebir
- Nabta Playa
- Bashendi
- Sheikh Muftah
Tasian
- Badari region
- Wadi Atulla
Badarian
- El-Badari
- El-Qaw
- Hammamiya / Hemamia (Middle Egypt)
- Mostagedda
- Deir Tasa (Upper Egypt)
- Matmar
- Mahgar Dendera
- Armant (Upper Egypt)
- Elkab
- Hierakonpolis
Naqada I
- Abadiya
- Abydos
- Adaima
- Armant (Upper Egypt)
- Deir Tasa (Upper Egypt)
- El-Amra
- El-Mahasna
- Gebelein
- Hammamiya / Hemamia, (Middle Egypt)
- Hierakonpolis
- Khattara (Upper Egypt)
- Maghara (Upper Egypt)
- Mersa Matruh
Naqada II
- Abydos
- Hierakonpolis
- el Gerza
- Naqada
Naqada III
- Naqada IIIa
- Naqada IIIb
- Tura
- Tarkhan
- Helwan
- Abu Rawash
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